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Gut Microbiome and Protein Fermentation

Microbial metabolism in the intestine, including the shift from fiber to protein fermentation and its health consequences.

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scienceOne report1 publisher

Formula-fed babies given breast-milk sugars and their bacteria had fewer respiratory infections

Imperial's Petter Brodin reports respiratory infections in 23% of babies on supplemented formula and 40% on plain formula. Nestlé funded the trial. Outside immunologist Daniel Davis cautions that a stronger immune response might raise allergy risk.

Publishers:newscientist.com

Reality

Evidence50
Adoption
Not scored
Hype gap+15
Incentives60
Confidence50
scienceOne report1 publisher

E. coli uses its Uhp sensor to detect glucose-6-phosphate released by Bifidobacterium

Hosei University researchers report that E. coli detects glucose-6-phosphate released by Bifidobacterium through its Uhp sensor. They suggest the signal works only if the two species live within 40 micrometres of each other.

Publishers:phys.org

Reality

Evidence55
Adoption
Not scored
Hype gap+25
Incentives40
Confidence50
scienceOne report1 publisher

DNA related to the giant bacterium Epulopiscium turns up in thousands of human gut samples

Researchers searching more than 600,000 microbiomes found DNA related to the giant bacterium Epulopiscium in thousands of human gut samples. The evidence is sequence data only, and Nicola Segata of the University of Trento says the source may be another, unknown bacterium.

Publishers:newscientist.com

Reality

Evidence35
Adoption
Not scored
Hype gap+20
Incentives
Not scored
Confidence40
scienceOne report1 publisher

People who ran a fever after a COVID shot had more bacterial flagellin in their guts

Researchers who tracked more than 170 people around a COVID shot found that those who ran a fever had more gut inflammation, in a study in Science. The human link is correlational, and the team has only begun testing whether the bacteria behind the fever can be reduced.

Reality

Evidence50
Adoption
Not scored
Hype gap+15
Incentives
Not scored
Confidence50
scienceConfirmed2 publishers

Strain dating suggests gut microbes rare in industrialized people traveled with early humans

Stanford-led researchers find the Hadza and Tsimane share over 1,200 gut bacterial species, about 60% of them rare or absent in industrial guts. For many species, strain split dates match migrations out of Africa and into the Americas, so the missing microbes look like companions handed down over millennia.

Publishers:nature.com phys.org

Reality

Evidence76
Adoption
Not scored
Hype gap+15
Incentives
Not scored
Confidence72
scienceOne report1 publisher

A gut-bacterium fatty acid halved arterial plaque in atherosclerotic mice

Pentadecanoic acid, made by Bacteroides gut bacteria, cut arterial plaque in mice by about 50% by inhibiting HMG-CoA reductase, the enzyme statins target. The matching human evidence is so far only a correlation.

Publishers:nature.com

Reality

Evidence60
Adoption
Not scored
Hype gap+12
Incentives48
Confidence55
scienceOne report1 publisher

In a 21-microbe gut community, arabinan favored Segatella copri only when Enterobacteriaceae like E. coli were present

Helmholtz Center researchers and collaborators built a 21-species gut community and found plant fiber boosted Segatella copri only when Enterobacteriaceae such as E. coli were also present. The result complicates diet-only accounts of why industrialized and nonindustrialized gut microbiomes differ.

Publishers:phys.org

Reality

Evidence58
Adoption
Not scored
Hype gap0
Incentives45
Confidence55
scienceOne report1 publisher

UCLA study links older-looking brain scans to specific gut bacteria

UCLA researchers scanning nearly 1,500 adults tied older-looking brains to specific gut bacteria in the one group that also gave stool samples. That makes the gut a lead for follow-up studies, though an association cannot show that changing gut bacteria would slow brain aging.

Publishers:sciencedaily.com

Reality

Evidence45
Adoption
Not scored
Hype gap+35
Incentives55
Confidence40
scienceOne report1 publisher

Memory gains in a 31-person coffee trial appeared only in the decaf group

John Cryan's lab at University College Cork found only the decaf half of 31 coffee drinkers improved on two memory tests. Cryan suspects gut microbes, but the blinded trial ties them to the result without showing they caused it.

Publishers:sciencealert.com

Reality

Evidence35
Adoption
Not scored
Hype gap+30
Incentives
Not scored
Confidence40
scienceOne report1 publisher

Wisconsin study ties a gut-bacteria molecule to faster cognitive decline

UW-Madison researchers linked higher blood levels of the gut-made compound ImP to faster cognitive decline in nearly 1,200 people. Evidence that ImP causes harm so far comes from mice, so lowering it to slow dementia is still an idea for the future.

Publishers:sciencedaily.com

Reality

Evidence55
Adoption
Not scored
Hype gap+20
Incentives45
Confidence50
scienceOne report1 publisher

Newborns with a strong immune reaction in week one had triple the eczema and food allergy rate at age 1

Petter Brodin's team found 39% of infants with a strong first-week immune 'seeding' reaction had eczema or food allergy by age 1, against 12% of the rest. The data, from nearly 600 Swedish babies, tie the risk to gut bacteria and feeding, and would put any prevention window within days of birth if the link proves causal.

Publishers:newscientist.com

Reality

Evidence35
Adoption
Not scored
Hype gap+15
Incentives
Not scored
Confidence40
scienceConfirmed2 publishers

Blood-cancer patients who ate more sugar on antibiotics lost more gut microbiome diversity

Memorial Sloan Kettering researchers found each extra 100g of sugary food on antibiotics went with an average 24% bigger gut-diversity drop in 158 patients. Mouse experiments point to sugar feeding a pathogen bloom, though the patient result is an association drawn from hospital meal logs.

Reality

Evidence65
Adoption
Not scored
Hype gap+30
Incentives
Not scored
Confidence60
scienceOne report1 publisher

Distinct gut microbes mark colorectal and breast cancers diagnosed at 50 or younger

Mayo Clinic researchers tie colorectal and breast cancers diagnosed at 50 or younger to distinct gut microbes, using stool from 1,364 patients. The signals give researchers named bacteria to test next, though the data cannot yet say whether those microbes drive early disease or follow from it.

Publishers:genengnews.com

Reality

Evidence55
Adoption
Not scored
Hype gap+5
Incentives
Not scored
Confidence55
scienceOne report1 publisher

Decaf and caffeinated coffee both lowered stress scores after a two-week break, Cork study reports

University College Cork researchers report that 31 habitual coffee drinkers scored lower on stress and depression once coffee returned, decaf or not. Gut microbe and metabolite differences make a gut-brain route plausible, though arms of about 15 people keep it an association.

Publishers:sciencedaily.com

Reality

Evidence35
Adoption
Not scored
Hype gap+45
Incentives60
Confidence40
scienceConfirmed2 publishers

Blood from 52 space station astronauts suggests their gut bacteria start fermenting protein within weeks

University of Copenhagen researchers found blood signs of gut bacteria fermenting more protein in 52 ISS astronauts within weeks of reaching orbit. The team suspects slower digestion and says Mars crews may need countermeasures, though blood chemistry alone cannot confirm the cause.

Reality

Evidence60
Adoption
Not scored
Hype gap+35
Incentives30
Confidence60
scienceOne report1 publisher

Age shapes broiler chickens' resistance genes more than antibiotics, probiotics or essential oils

Penn State found age reshaped the resistance genes of 320 broiler chickens far more than antibiotic, probiotic or essential-oil feed did. With the antibiotic diet also flat, the three-week trial cannot show the alternatives reduce resistance.

Publishers:phys.org

Reality

Evidence45
Adoption
Not scored
Hype gap+15
Incentives
Not scored
Confidence40
scienceOne report1 publisher

Engineered E. coli show that microbe-made putrescine lengthens fruit-fly life

Researchers in Japan engineered gut E. coli to make or withhold putrescine, and the producing strains raised male fly lifespan to 13.8 days from 11.0. The design isolates a microbial metabolite as a cause, though the effect broke down in females.

Publishers:phys.org

Reality

Evidence55
Adoption
Not scored
Hype gap+20
Incentives
Not scored
Confidence55
scienceOne report1 publisher

Engineered E. coli stocks the mouse gut with phages before Salmonella arrives

Gut phage therapy usually fails because you cannot get enough phage to enough bacteria in time. A team writing in Nature Microbiology built a resident E. coli that makes the phage on site, and it protected mice against an oral Salmonella challenge.

Publishers:genengnews.com phys.org

Reality

Evidence58
Adoption10
Hype gap+20
Incentives45
Confidence62
scienceOne report1 publisher

A week of eating polystyrene foam lifted three detoxification genes in the wharf roach gut

Kyushu University fed shoreline isopods nothing but polystyrene board for a week and found the effect in their gut transcriptomes rather than in their survival, which puts real weight on the choice of control group.

Publishers:phys.org

Reality

Evidence52
Adoption
Not scored
Hype gap+30
Incentives55
Confidence55
scienceOne report1 publisher

BTI and Cornell pre-compute 800 million mass spectra to give unknown metabolites something to match

Rather than wait for experimental libraries to fill, the Cornell and BTI tool indexes a chemical space roughly a thousand times wider. What a query returns is a candidate structure rather than a confirmed one.

Publishers:phys.org

Reality

Evidence42
Adoption20
Hype gap+32
Incentives62
Confidence50

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